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GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttgaatcatgactaactgtgctggcaatttttaaataatggtcaattgtgccatttaatactgtgtatgattaaaagtcctgtgttatttttt...
species | Oryza sativa |
transcript | LOC_Os01g69130.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTGGTCAAGGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCEST: gi|58679026|gb|CK067713.1|CK067713
genomic: GCTGGTCAA-GGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
EST: GCTGGTCAAGGTGCTAAGCTTGTGAACATTCTGGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCEST: gi|58658952|gb|CK047632.1|CK047632
genomic: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
EST: GCTGGTCGAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCEST: gi|58695675|gb|CK084362.1|CK084362
genomic: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
EST: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCEST: gi|66928093|gb|CX114941.1|CX114941
genomic: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
EST: GGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCEST: gi|29655723|gb|CB651998.1|CB651998
genomic: GGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
EST: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG CTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
genomic: GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttg ... tatgttatagCTTTCTCCTCAATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGgtaatttttgaatcatgactaactgtgctggcaatttttaaataatggtcaattgtgccatttaatactgtgtatgattaaaagtcctgtgttatttttt
- - - - - - - - - - - - - - - - GCAAAG