Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAGgtcttctcatagttcaattctctgacaaccacctgattattattctttcatgtacagcttaactgacaaactcatggcatttatttag

Basic information

species Oryza sativa
transcript LOC_Os01g69030.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69030.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM5G875238_T01 (Zea mays), 5'ss of exon 8
GGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAGgtcttctcatagttcaattctctgacaaccacctgattattattctttcatgtacagcttaa--------ctgacaaactcatggcatttatttag
|||||||||||||| |||||||| |||||||| || |||||||||||||||||||||  ||  |  |  | |||||| || | |   ||  | || || |   |   | |  |||         |||| |||    |||| || |     
GGCGTCTTCATCAACCCTGCTCTCGTTGAGCCGTTTGGTCTCACCCTGATCGAGgtcagcttcttctctagttctctaaccagctgttgcctttttttttaaaaaaaatacattacattgcactctgaaaaatgtgtggctttcag----

upper sequence: LOC_Os01g69030.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G140107_T01 (Zea mays), 5'ss of exon 9
GGCGTCTTCATCAATCCTGCTCTTGTTGAGCCTTTCGGTCTCACCCTGATCGAGgtcttctcatagttcaattctctgacaaccacctgattattattctttcatgtacagcttaactgacaaactcatggcatttatttag--------------------
|| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||  ||     |||| |||||| || | ||||| ||   | || ||| |   | |  ||| | |  | |  | |   ||||   ||                     
GGTGTCTTCATCAACCCTGCTCTCGTTGAGCCGTTCGGTCTCACCCTGATCGAGgtcagcttc---ttcagttctctaactatcacct-atagattttttttaagaaatacattatcagctatagcctttaaatttcactatgaaaaatgtgtggctttcag