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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGAAGAATCACAAGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTTgtaagctcagtctcaactggacatcctgttagtttctttttgtctgtggagaaacttattggtcgtttttttatcagctaacagccctcgtgcattgtat...

Basic information

species Oryza sativa
transcript LOC_Os01g65330.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G148773_T01 (Zea mays), 5'ss of exon 8
CAATGAAGAATCACAAGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTTgtaagctcagtctcaactggacatcctgttagtttctttttgtc-tgtggagaaacttattggtcgttt--ttttatcagctaacagccctcgtgcattgtat--
|| |||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||   ||   |  |  ||||| | |||| ||   | ||| ||    ||| ||   ||||||  |  |||||  || |||  |||     
CAGTGAAGAATCACAGGAACCTACCAAGCGACGCAATAGATTGGGTTCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTTgtaagttca---caggctc--cacttttctgttttctctgtgtcctggatataaaattcagtgtctttcgcttttattggaaaacagttctggtgtgttgctgat

upper sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 9
CAATGAAGAATCACAAGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTTgtaagctcagtctcaactggacatcctgttagtttctttttgtc-tgtgg-agaaacttattggtcgtttttttatcagctaacag-----ccctcgt-gcattgtat--------------------------------------------------------------------------------------
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| |||  |   |       | || ||  ||||| | |||| ||    |   |  |||     ||||      ||| | |  |       || || |  |||| |                                                                                      
CAGTGAAGAATCACAGGAACCTACCAAACGACGTAATAGATTGGGTCCAGCAGGTCTTGCACTGCATTATGCAAATATCATCAGTCAGATTGATACTCTTgtaagttca--caggatccactgttctattgttttctctgtgtcctgcattatgcaaatatcatcagtttgacctacagttcatggggttgtactagtagttttgtgtgccacacaaattgaatttgttgtgctaagaaaatcattttttttgtttcttttctggtagcctaacaagggttgatcaattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680203|gb|CB676478.1|CB676478
EST:     CAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTT                         GTTTCTCGATCTAGTTCTATTCCTCCAAACACAAGAGATGCATTATACCAA
genomic: CAGGCCTTGCACTGCATTACGCCAATATCATCAGTCAGATCGATACTCTTgtaagctcag ... taattggcagGTTTCTCGATCTAGTTCTATTCCTCCAAACACAAGAGATGCATTATACCAA