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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag

Basic information

species Oryza sativa
transcript LOC_Os01g64660.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 9
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctactt--atgttttcagaatagtgt-acttcctgaagaacctgagctaaaatctacaacaatcatttacag--------
|| ||||||||||| || |||||||||||||||||||| ||||| ||||| |||||    ||||| || | ||| |    | ||   || | | | |||  | | |    ||   | |  |  |  ||  |    |   ||  || ||          
ATCCCAAAGAAAGGTAAAATTTATTCAGTGAATGAAGGAAATGCCAAAAACTGGGATCGTCCTACTGCTACgtatgtttgaattcagtgatcttataatgttttcaggcactagtgcatatttgtcaatcttgtaattcatttttcacttcttctcag

upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ18090 (Selaginella moellendorffii), 5'ss of exon 8
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag
||||||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| ||   |  ||| |       | |  |||   || |||  |  |  |||   |    ||                          
ATACCAAAGAAGGGAAAAATTTATTCCGTGAATGAGGGCAATGCAAAGAACTGGGACGAGCCCACTAGATTgtaagtttagtgttttctttttaaaaagta-agattttgatttatgacag--------------------------

upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ36627 (Selaginella moellendorffii), 5'ss of exon 7
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag
||||||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| ||   |  ||| |       | |  |||   || |||  |  |  ||  |||       |   || ||  |||           
ATACCAAAGAAGGGAAAAATTTATTCCGTGAATGAGGGCAATGCAAAGAACTGGGACGAGCCCACTAGATTgtaagtttggtattttcttttcaaaaagta-agattttggtgaatta----tttgatttatgacag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682613|gb|CB678888.1|CB678888
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|38473796|gb|CF957928.1|CF957928
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|58590217|gb|CF988525.1|CF988525
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|4714676|gb|AU055793.1|AU055793
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTNCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT