1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGGCTGTGGCACACTGTATGCACATCTGTAGATGGCGATGTCTATTCCTTCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattctattgagtaaagtgcattggtggtccttaaacttgtagggttgtgtcatataggtccctaaactctcgaaatgcatatctagatcccaga...
species | Oryza sativa |
transcript | LOC_Os01g62810.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|29617734|gb|CB622746.1|CB622746
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|88228786|gb|CI228266.1|CI228266
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|29617735|gb|CB622747.1|CB622747
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|29664301|gb|CB660576.1|CB660576
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|38473651|gb|CF957783.1|CF957783
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: GGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|88998355|gb|CI038240.1|CI038240
genomic: GGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCCAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|29677605|gb|CB673880.1|CB673880
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTTTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|86496172|gb|CI138805.1|CI138805
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|29670637|gb|CB666912.1|CB666912
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGAEST: gi|86900111|gb|CI300166.1|CI300166
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
EST: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAG ACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
genomic: TCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattc ... ttttatgcagACTGTACCAAAACTGGTAGATGCCTCAAGCTTGGAGAATAAGAATGCACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCTGTGGCACACTGTATGCACATCTGTAGATGGCGATGTCTATTCCTTCGGAGGAAACCAGTTTGGGCAGCTGGGCACTGGTTCTGATCAAGCTGAGgtacaaattctattgagtaaagtgcattggtggtccttaaacttgtagggttgtgtcatataggtccctaaactctcgaaatgcatatctagatcccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA