1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATGTTGTTGAGAAGTGTTTAACATTTGGCGGACCTGCAGAGCGGGAAGTTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcattatgatatttgtgttttattggtgtccaattatctcatggattagagcttcatatttttctgggggcagtagggcaattcaatgcgccttga...
species | Oryza sativa |
transcript | LOC_Os01g62650.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|87016447|gb|CI273657.1|CI273657
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|58656359|gb|CK045039.1|CK045039
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|29633935|gb|CB638944.1|CB638944
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TGACGAGAATGAGCTTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGAACAGAAAGTACTGGAGEST: gi|29627677|gb|CB632688.1|CB632688
genomic: TGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|29633937|gb|CB638946.1|CB638946
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|29622762|gb|CB627773.1|CB627773
genomic: TGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|29645189|gb|CB650196.1|CB650196
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGEST: gi|29622960|gb|CB627971.1|CB627971
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
EST: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAG GCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
genomic: TTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcatta ... acacttgcagGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTTGTTGAGAAGTGTTTAACATTTGGCGGACCTGCAGAGCGGGAAGTTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttttcattatgatatttgtgttttattggtgtccaattatctcatggattagagcttcatatttttctgggggcagtagggcaattcaatgcgccttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggcag