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GCTCCGTAAATGGAGCAAACTGCAAAGAACTTGCTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcctattcctttattatcctctccatgatattgatagtagcatgtagaacataagcctagttaaacaaaacaccatttgaccagtacaatcct...
species | Oryza sativa |
transcript | LOC_Os01g62420.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAG CCTGAATTTGTGGACATCATNCA-GTCTGCTAEST: gi|27576926|gb|CA999620.1|CA999620
genomic: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcc ... ttttctgcagCCTGAATTTGTGGACATCAT-CAAGTCTGCTA
EST: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAG CCTGAATTTGTGGACATEST: gi|163928335|gb|EG712603.1|EG712603
genomic: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcc ... ttttctgcagCCTGAATTTGTGGACAT
EST: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAG CCTGAATTTGTGGACATCATCEST: gi|33691551|gb|CF319790.1|CF319790
genomic: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcc ... ttttctgcagCCTGAATTTGTGGACATCATC
EST: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAG CCTGAATTTGTGGACATCATCAAGTTTGCTACCGTCAAGTTTTTTGCTTAGEST: gi|33690114|gb|CF318353.1|CF318353
genomic: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcc ... ttttctgcagCCTGAATTTGTGGACATCATCAAGTCTGCTACCGTCAAGTCTTCTGCTTAG
EST: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAG CCTGAATTTGTGGACATCATCAAGTTTGCTACCGTCAAGTTTTCTGCTTAG
genomic: CTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcc ... ttttctgcagCCTGAATTTGTGGACATCATCAAGTCTGCTACCGTCAAGTCTTCTGCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCGTAAATGGAGCAAACTGCAAAGAACTTGCTGCTAAACCTGATGTTGATGGATTCCTTGTTGGAGGAGCTTCATTGAAGgtcatattcctattcctttattatcctctccatgatattgatagtagcatgtagaacataagcctagttaaacaaaacaccatttgaccagtacaatcct
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG