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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTGAAAGAAAAGGAACATGCTGTTCAATTGGAAAATTTAACCAAGAACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgttacaaaaatcttgaaaacccctgctttacaattgagatgcattatacttttcatagccagtctacaaattctacctggtttatctgatccatgttggtagttgggtccttttattaattgatttgaacatggaagaagtgtgcataattgttttaccattgccttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g62410.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58587466|gb|CF985774.1|CF985774
EST:     ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGGTGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|86887181|gb|CI325996.1|CI325996
EST:     GATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
genomic: GATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|29666578|gb|CB662853.1|CB662853
EST:     ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|33678849|gb|CF307088.1|CF307088
EST:     ACTTTGCGCATAAAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|29632972|gb|CB637981.1|CB637981
EST:     ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|29628141|gb|CB633152.1|CB633152
EST:     ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGGTGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
EST: gi|86866749|gb|CI343555.1|CI343555
EST:     ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAG                         GAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT
genomic: ACTTTGCGCATACAACCAATTTGGATGTAACCTAATCTTGGAAAATGCAGgtatgctgtt ... tgccttgtagGAACTGACATCAATCTGATGAAGTAGGACAGATGAGCTGAAGTGTCTTTCT