1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGAACTGATATGACAAGTCCGCATGGTATACCAGTTGATCTTCTAGATCGATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgattttgggtcttatatcagttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcag
species | Oryza sativa |
transcript | LOC_Os01g62040.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|86483323|gb|CI125956.1|CI125956
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|88829069|gb|CI073939.1|CI073939
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|86495810|gb|CI138443.1|CI138443
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTEST: gi|29613696|gb|CB618709.1|CB618709
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
EST: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAG ATTCTCGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
genomic: GATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgatttt ... ccgtttgcagATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACTGATATGACAAGTCCGCATGGTATACCAGTTGATCTTCTAGATCGATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtttgattttgggtcttatatcagttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG