1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtatttaacagcaacaatggacttgaattattcctgttcatttttcttgccatgaaattgtttcatccaagattctgttttctgtaataaacaactgccttttccttcacag
species | Oryza sativa |
transcript | LOC_Os01g60660.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAGCCCAGAGGAACTTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAEST: gi|86594926|gb|CI258180.1|CI258180
genomic: TCAGCCCAGAGGAAC-TTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGA
EST: AGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|58688789|gb|CK077476.1|CK077476
genomic: AGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|86418870|gb|CI053671.1|CI053671
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|86492758|gb|CI135391.1|CI135391
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|86434980|gb|CI106213.1|CI106213
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|29672822|gb|CB669097.1|CB669097
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|86823873|gb|CI258854.1|CI258854
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|29642064|gb|CB647071.1|CB647071
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|29642108|gb|CB647115.1|CB647115
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACEST: gi|58694983|gb|CK083670.1|CK083670
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
EST: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTT AATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
genomic: ATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtattt ... tccttcacagAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTgtgagtatttaacagcaacaatggacttgaattattcctgttcatttttcttgccatgaaattgtttcatccaagattctgttttctgtaataaacaactgccttttccttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA