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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCAGAGAATGGGGATGCTGTTGCTGAGGGACAGCAACGAATGATCGATCTTGGGATAACTGGCCCAGAAGGACATGCTCTCTCAAGACCTCCAGTTgtaatttcacactaactcttcgcatttactgttatgcctatttatcttgatatgttggacagatcaagtgttttcttatacaatattcaagtcaatttggtgaactagacacaccatgaaatttgtgtattttctctcacaaggaaggatagataccattgagctgcttcttgttccctgcag

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 5
TCATGCAGAGAATGGGGATGCTGTTGCTGAGGGACAGCAACGAATGATCGATCTTGGGATAACTGGCCCAGAAGGACATGCTCTCTCAAGACCTCCAGTTgtaatttcacactaactcttcgcatttactgttatgcctatttatcttgatatgttggacagatcaagtgttttcttatacaatattcaagtcaatttggtgaactagacacaccatgaaatttgtgtattttctctcacaaggaaggatagataccattgagctgcttcttgttccctgcag
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TCATGCAGAGAATGGTGATGCTGTTGCCGAGGGACAACAGCGGATGATTGACCTTGGGATAACTGGTCCAGAAGGGCATGCTCTCTCAAGGCCTCCAATTgtaaccccaaatctaaccttctattcttctgttatgctcctagtcctagatatgtt---cag-------gttttca---ataataattaggaca--ctaaggaacctgccatct------attctcacattaagctattcaaaaatg---aaataattttg------ttctcattcactgcag