1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagacccttaccttctggtaactgtaaggttaaaatgatctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcag
species | Oryza sativa |
transcript | LOC_Os01g57220.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACTGAGAGTGCTTTGAAGTTNGGATGGTTTTTCCTGTTTTGCTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|11370676|gb|AU164981.1|AU164981
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|87035348|gb|CI189970.1|CI189970
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|86889655|gb|CI299853.1|CI299853
genomic: GAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|3760903|gb|C98157.1|C98157
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCEST: gi|33683758|gb|CF311997.1|CF311997
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTC
EST: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTG ATCCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTT
genomic: GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagaccct ... cccctttcagAT-CCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaagacccttaccttctggtaactgtaaggttaaaatgatctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcag
- - - - - - TTGAAG