Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaactttcattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac...

Basic information

species Oryza sativa
transcript LOC_Os01g56670.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 8
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaactttcattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac-----
|||||||||||| || ||||||||||||||| ||||||| || |||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||| |    ||| ||  | |||||| ||||||| |   |  | |  |    ||| || |  | |   | ||||   |||    | ||  |  || |  |       
AGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttgg--ttttatcctttcagtggtagttttaatttttaaagcaa--ctgctagcatcctctcattaatattttaactctgtatttcattat-atttgtggagc

upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 7
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaacttt-cattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac-----
|||||| || ||  | ||||||||| | ||||||||  | || || ||| |||| || ||||| ||||| ||||| ||||| |||||||||||||| ||||||  || | |  ||||| |  ||   |  | |  |  || |  |     |   | | |       |  || ||     || |   |||   |||  ||||     
AGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATGGACACAAAAGgtacaaagtatatattattt--gttgaaaatatacatatacacata----catgtacatacatacacacatgtgtgtgtgtgtgtgtgtgtgatgctctactttct

upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaa-------ctttcat-tatctcagtg-----atagttt--tgaaactagatgttata------tcgcttgcgttgtgttgctgatatgcaaacgtcttgttgtagaatgaactac
|||| |||| ||  | ||| | ||| ||||||||||  | || || || ||| | |||||||| || || ||||| ||||| |||||||||||||||||||||  ||       |||   | ||| ||||       |  ||||  ||||  | | |   | |      |   |    || |||  |  | || | ||  |  |  |||  | |   |   
AGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATGGACACAGAAGgtaacaaaaaatggcttctgtatatgtcagaagaactacggtttgatgaactttgcttcaacaaactaattagtctttttttgtcacccaaattctaaaatggtagtgtttacttggcag-

upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 9
AGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATGGACACAGAAGgtattaactttcattatctcagtgatagttttgaaactagatgttatatcgcttgcgttgtgt--tgctgatatgca-aacgtcttgttgtagaatgaactac
||||||||| ||  | |||| |||| ||||||| ||| | || || ||  |||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||  |  | |  ||| |      | | | |     |    | || |||  ||    | | |   |||| |  |    ||| || |  | |    | |  |  
AGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATGGACACAGAAGgtaacatttgtt-ttaacatgaaaacattgtaagggccttcttttctatttctaagatagagaaatgcttagttatttaacatcataatttct--ttattttt