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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatatttaagtcatcctattgtttcttgttttttactcctgaatgttgttcagagctgtaattaagttgatactccataaacaacag

Basic information

species Oryza sativa
transcript LOC_Os01g55500.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G437859_T02 (Zea mays), 5'ss of exon 9
TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacag
||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||||||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||
TCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacag

upper sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G437859_T01 (Zea mays), 5'ss of exon 8
TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacag
       | || |||||||| || ||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||||||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||
-------CCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacag

upper sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 8
-------------TCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacag----
             ||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||||||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||    
CTCTCTTGGACAGTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacagggaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669485|gb|CK058171.1|CK058171
EST:     GTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG                         GGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACC
genomic: GTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatattt ... taaacaacagGGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACC
EST: gi|33793472|gb|CF322619.1|CF322619
EST:     GTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG                         GGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACC
genomic: GTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAGgtggatattt ... taaacaacagGGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACC