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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGCCTTGTGAACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAGgtttgctttggctcttgtcattgtcaattttccagctgtaaaatatagaatggctggttagttcctaaactaaatgcctccag

Basic information

species Oryza sativa
transcript LOC_Os01g53600.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g53600.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G158562_T03 (Zea mays), 5'ss of exon 6
GTTGCCAGCCTTGTGAACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAGgtttgctttggctcttgt-cattgtcaattttccagctgtaaaat-atagaatggctggttagttcctaaactaaatgcctccag-----------------------
||||||||||||||||| |||||||||  | |||| ||||||||||| ||  | |||||| ||||||||  ||||  |  | | ||||     |||||||| || |||||  | |  |||      ||||| |      ||||   |                          
GTTGCCAGCCTTGTGAATATTCTTGATTTTAAACTGGCAAAAGGTGTAGGCGACTACATAGCAAGgttttgtttgtgttatatacattcaattttttccagttgcaaaattgttgcttggtca--cagttcttttctagaatgttgctcaattgatatactatatgactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674660|gb|CB670935.1|CB670935
EST:     AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAG                         GTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA
genomic: AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAGgtttgctttg ... atgcctccagGTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA
EST: gi|218480035|gb|FG968183.1|FG968183
EST:     AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAG                         GTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA
genomic: AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAGgtttgctttg ... atgcctccagGTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA
EST: gi|29674619|gb|CB670894.1|CB670894
EST:     AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAG                         GTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA
genomic: AACATTCTTGATGGTGAACTAGCAAAAGGTGTTGGAAATTACATAACAAGgtttgctttg ... atgcctccagGTGTCAAACCTATGAAGGTGGCATTGCTGGGGAACCGTATGCTGAAGCTCA