1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgtatttcattaaaatctatacctgcttcactatggttccccttgtgccatctttccctctgtttttcattgtacatctgttacaaaggaaaaactcgcctgtgcatttcattttatttgagaaacacaaattactctggtgcttgagtaattgcatctgacag
species | Oryza sativa |
transcript | LOC_Os01g49060.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCATTTACTGTGGAAG GAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGEST: gi|86594939|gb|CI258193.1|CI258193
genomic: AAGTTCATTTACTGTGGAAGgtatgttgta ... catctgacagGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
EST: ACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAG GAGGAGCTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGEST: gi|88964723|gb|CI070069.1|CI070069
genomic: ACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgta ... catctgacagGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
EST: TAGGAAGTCAGAAGTTCATTTACTGTGGAAG GAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGEST: gi|109712884|gb|CI105492.1|CI105492
genomic: TAGGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgta ... catctgacagGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
EST: GGAAGTCAGAAGTTCATTTACTGTGGAAG GAGGAACTGACGTGGAATGAGAAACCTATCAGGCGCTACCAAGGGAGAGAGEST: gi|29681676|gb|CB677951.1|CB677951
genomic: GGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgta ... catctgacagGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
EST: ACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAG GAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
genomic: ACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgta ... catctgacagGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGgtatgttgtatttcattaaaatctatacctgcttcactatggttccccttgtgccatctttccctctgtttttcattgtacatctgttacaaaggaaaaactcgcctgtgcatttcattttatttgagaaacacaaattactctggtgcttgagtaattgcatctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG