Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattctatggacggttgtacagtttcaatttattattccttttgcttttggtggtgccccctgccaatttattatcacttacagtgaaatgcatatgctctcaaatcctttag

Basic information

species Oryza sativa
transcript LOC_Os01g47262.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47262.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G013625_T03 (Zea mays), 5'ss of exon 7
GTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattctatggacggttgtacagtttcaatttattattccttt-tgcttttggtggtgccccctgccaatttattatcacttacagtgaaatgcatatgctctcaaatcctttag-----------------------------------------------------
||||||||||||||||| ||||| |||||| | || ||||| ||||| || |||||||| |||| ||  |   |  | | |     | | ||| |  |   |    | | |||    |     || ||  ||    ||||   |    |||   | |  ||   | ||                                                         
GTTATGTTACCAGAGGCTGTTGCAATTGTGGTCGCACCCACAGATCCAACCAGgcaagtgttctttg--ctaataaatactacacttgtgttacttgtacataaaatggctggcatacatctgcagttcctttgttcttaatttcttttgctcctacattctggttctgggtaaacttatataacgtaatctgaaaatgccctatttgtttctcaaatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44677600|gb|CR291034.1|CR291034
EST:     GTGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
EST: gi|218493474|gb|FG952533.1|FG952533
EST:     ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAGTATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAT
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
EST: gi|33658750|gb|CF281363.1|CF281363
EST:     ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGGTGTGCTTA
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGG-TGTGCTTA
EST: gi|29670555|gb|CB666830.1|CB666830
EST:     ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
EST: gi|88226876|gb|CI224644.1|CI224644
EST:     ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
EST: gi|86496637|gb|CI139270.1|CI139270
EST:     ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAG                         GAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG
genomic: ATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGgcaagtattc ... aatcctttagGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAG