1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGgcaatagttctgtctcatatttctactgaagacaattttcttttctgaagtagaaaaaacctatcgtgccccatttcactaaagtgaaattccacagttc...
species | Oryza sativa |
transcript | LOC_Os01g45620.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAG GGAAAGATGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTEST: gi|27554205|gb|CA998105.1|CA998105
genomic: CAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGgcaatagttc ... atcgtttcagGGAAAGA-GTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACT
EST: CAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAG GGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGEST: gi|27554152|gb|CA998052.1|CA998052
genomic: CAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGgcaatagttc ... atcgtttcagGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTG
EST: CAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAG GGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTG
genomic: CAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGgcaatagttc ... atcgtttcagGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGgcaatagttctgtctcatatttctactgaagacaattttcttttctgaagtagaaaaaacctatcgtgccccatttcactaaagtgaaattccacagttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa