1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAGTCATCATATATTGGTGGTCTGAAATCACTGGAGGAGTTCCGTCACATTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactatggttttcgtcccattgaaaataatctctattctttatgggtgtgatttgcatgacatttgtgctaggaataggattgccatagttggcatcatcgatgagtcatgacactgcaattagataatgtacttgtcttgtgcttgatatag
species | Oryza sativa |
transcript | LOC_Os01g27730.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|29677556|gb|CB673831.1|CB673831
genomic: ATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|58686990|gb|CK075677.1|CK075677
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|86430112|gb|CI082535.1|CI082535
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|88221557|gb|CI221513.1|CI221513
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: CATCTAATGCCCCACCGCAGATGGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|29625715|gb|CB630726.1|CB630726
genomic: CATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGNNNNNNNGCAGATTGACGAAGAGATGTTAGAG GATGGCAAGAAGCAGAATGACCCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|29622337|gb|CB627348.1|CB627348
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|58587815|gb|CF986123.1|CF986123
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATGEST: gi|58671487|gb|CK060173.1|CK060173
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
EST: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAG GATGCCAAGAACCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
genomic: TTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactat ... cttgatatagGATGGCAAGAAGCAGAATGAACCTGCGCAGGAAAACCATGATGAGTCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTCATCATATATTGGTGGTCTGAAATCACTGGAGGAGTTCCGTCACATTGAGATTCCATCTAATGCCCCACCGCAGATTGACGAAGAGATGCTAGAGgtattactatggttttcgtcccattgaaaataatctctattctttatgggtgtgatttgcatgacatttgtgctaggaataggattgccatagttggcatcatcgatgagtcatgacactgcaattagataatgtacttgtcttgtgcttgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG