Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAATgtgagcacacgaaatatttgcttctgtaattatatgaaaattgttatagttacatataaaataccattgattctcag

Basic information

species Oryza sativa
transcript LOC_Os01g23610.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g23610.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 8
GTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAATgtgagcacacg-aaatatttgcttctgtaattatatgaaaattgt-tatagttacatataaaataccattgattct-cag
||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||| | ||||  |||||     ||||  |  |   ||   ||| ||  |||  |||| |       || | |||
GTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAATgtaagtacatggaaatggttgctatcagaatt-cacaagttttaaatatggtagcatccaaaacatgcccttttatacag

upper sequence: LOC_Os01g23610.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 8
GTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAATgtgagca--cacgaaatatttgcttctgtaattatatgaaaattgttatagttacatataaaataccattgattctcag---------
|||||||| || || ||||| ||||||||||| ||||||||  |||| ||||| ||||| ||||| ||||    ||| | |  |     |   ||||   ||   |   || ||  |   ||   |||   ||| |     |         
GTGGATGCTGCACTAATAGCAACCGGAAGGGCTCCGTTCACACAAGGTCTTGGATTGGAGAATgtaagcaattccgacagagatatgcttaggattaggagattttctctaaaggaagtaattgtatatttttgttaacttgtacctacag