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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAGAGCCCCAGAACTCATATTTGGGGCTACAGAGTACACGACAGCTATTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtcaacctagttgtcatcatacattacccaatttcttgaagcaacttctctgaattatttgctgttggttag

Basic information

species Oryza sativa
transcript LOC_Os01g19150.5
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G075992_T01 (Zea mays), 5'ss of exon 4
CTACAGAGCCCCAGAACTCATATTTGGGGCTACAGAGTACACGACAGCTATTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtcaacctagttgtcatcatacattacccaatttcttgaagcaacttctc--tgaattatttgctgttggttag
||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||||||| || |||||||| ||||||| |  |||||| |||| |  | ||| || | |||| |  ||||||||||||||   | |  ||  || |||||| |||
CTACAGAGCCCCAGAGCTCATATTTGGGGCTACTGAGTATACAACAGCTATTGACGTGTGGTCTGCTGGTTGTGTACTTGCTGAGCTTCTTCTAGGTCAGgtaatagatcaaccaagttattgtgatatatcagccaact--ttgaagcaacttcttcataagatacctgttgttggatag

upper sequence: LOC_Os01g19150.4 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
CTACAGAGCCCCAGAACTCATATTTGGGGCTACAGAGTACACGACAGCTATTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaag-----tcaacctagttgtcatcatacattacccaatttcttgaagcaacttctctgaattatttgctgttggttag------
|||  |||| || ||||| |||||||| || || || ||||| ||||| |||||| | ||||| || ||||||||| | ||||||||||| || || || ||||| |      |  || | | |     | ||||||    | || |||      |  | |   ||| | |   | |   ||        
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628248|gb|CB633259.1|CB633259
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|33683226|gb|CF311465.1|CF311465
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|29668828|gb|CB665103.1|CB665103
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|29666992|gb|CB663267.1|CB663267
EST:     CTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: CTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|29628183|gb|CB633194.1|CB633194
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|29666642|gb|CB662917.1|CB662917
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
EST: gi|218502361|gb|FG956952.1|FG956952
EST:     TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAG                         CCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG
genomic: TTGATGTGTGGTCTGCTGGCTGTGTTCTTGCTGAACTACTTCTAGGGCAGgtaagaagtc ... tgttggttagCCTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG