1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtacagacttaaaaaatactgacatgctcatcattctactaagtcatgaaggatttgtgtagtgcatacttagtagttttaattgtgttccctc...
species | Oryza sativa |
transcript | LOC_Os01g14950.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|55411455|gb|CV723831.1|CV723831
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTEST: gi|29676486|gb|CB672761.1|CB672761
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCT
EST: TGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|29640361|gb|CB645370.1|CB645370
genomic: TGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|66912883|gb|CX099731.1|CX099731
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|218501071|gb|FG960845.1|FG960845
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: GACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|218505438|gb|FG959801.1|FG959801
genomic: GACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|218479493|gb|FG944059.1|FG944059
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|58684581|gb|CK073268.1|CK073268
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|13806131|gb|AU181373.1|AU181373
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACGEST: gi|218496280|gb|FG960701.1|FG960701
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
EST: C-TGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAG GCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
genomic: CTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtac ... actaccatagGCTGTCATAAATGCTGGCATTATTGGTCCTCTGGTGAATCTGCTCCAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtacagacttaaaaaatactgacatgctcatcattctactaagtcatgaaggatttgtgtagtgcatacttagtagttttaattgtgttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat