Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctggttgtcattactcattagatatgacaatactctatatgatcaatattggtctaaaaaattctttagctggttgaaatgtag

Basic information

species Oryza sativa
transcript LOC_Os01g14810.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14810.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 7
GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctggttgtcattactcattagatatgacaatactctatatgatcaata--ttggtctaaaaaattctttagctggttgaaatgtag
||||||||||  |||||||||||||| ||||||||||| ||||| |||||| | |  ||||   || |     ||  |||||        |||||||  | ||  ||  ||| |||| |||||||||||||||||||||||
GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttaggtta--atcatattataattatga--------tatatgactattacctttttctgaaaacttctttagctggttgaaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627736|gb|CB632747.1|CB632747
EST:     GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG                         AGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG
genomic: GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctg ... tgaaatgtagAGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG
EST: gi|66923280|gb|CX110128.1|CX110128
EST:     GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG                         AGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG
genomic: GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctg ... tgaaatgtagAGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG
EST: gi|29673384|gb|CB669659.1|CB669659
EST:     GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG                         AGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG
genomic: GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctg ... tgaaatgtagAGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTG