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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtgataaatttggtccaagaagtataatattattcgtgcattatgcttactgttggtgttcctctttccatgaccaacttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g13770.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13770.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G070605_T02 (Zea mays), 5'ss of exon 7
----------------------ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtgataaatttggtccaagaagtat-----aatattattcgtgcattatgcttactgttggtgttcctctttccatgaccaacttgcag
                      ||||| |||||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| || ||||||||||||||||||    |        ||| ||||      ||||  |||||||    || | |||  ||  |  |  ||  |  ||||      |||||
CTAATCGTTTCTGGCATTGCAGACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATCgtaagtgtggattaccacagttaagtagtagtaagaaataggattcgtgggccatacatacaattt-taatggtccatatatgattg---tgcag

upper sequence: LOC_Os01g13770.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G070605_T01 (Zea mays), 5'ss of exon 8
ACTGATATGGATAGCACCAATGTGTATGCTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtgataaatttggtccaagaagtat-----aatattattcgtgcattatgcttactgttggtgttcctctttccatgaccaacttgcag
||||| |||||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| || ||||||||||||||||||    |        ||| ||||      ||||  |||||||    || | |||  ||  |  |  ||  |  ||||      |||||
ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATCgtaagtgtggattaccacagttaagtagtagtaagaaataggattcgtgggccatacatacaattt-taatggtccatatatgattg---tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640948|gb|CB645955.1|CB645955
EST:     CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATC                         ATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
genomic: CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtga ... caacttgcagATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
EST: gi|29661884|gb|CB658159.1|CB658159
EST:     CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATC                         ATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
genomic: CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtga ... caacttgcagATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
EST: gi|325493498|gb|JG458022.1|JG458022
EST:     CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATC                         ATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
genomic: CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtga ... caacttgcagATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAA
EST: gi|29657881|gb|CB654156.1|CB654156
EST:     CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATC                         ATCGAGGGACCTCAACTATTGCAGCATGGT
genomic: CTTATATCTCAATAATTGCCCTTATTGTGTGCATTCCACCAGCAGTGATCgtaagtgtga ... caacttgcagATCGAGGGACCTCAACTATTGCAGCATGGT