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GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaatcttttgttctgtaacttgtaggggctatttttaggtgcaccatgcaggggataggggctgtggtcttctctttactctatatatgattg...
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGEST: gi|29680232|gb|CB676507.1|CB676507
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGEST: gi|29685418|gb|CB681693.1|CB681693
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGEST: gi|88422364|gb|CI689178.1|CI689178
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGEST: gi|58678012|gb|CK066699.1|CK066699
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGTAATCAGTATGTCACGGCTGCAAAAATGEST: gi|29683233|gb|CB679508.1|CB679508
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGEST: gi|87017573|gb|CI289706.1|CI289706
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGEST: gi|58666767|gb|CK055453.1|CK055453
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
EST: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAG GTTGAAAAAATATTTGGACCTGGTAATCAGTATGTCACGGCTGCAAAAATG
genomic: GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaa ... gtctttgtagGTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATTTCAGCCATGGCATGGGGAACAGTCTCATGCCCAAAGgtacttggaatcttttgttctgtaacttgtaggggctatttttaggtgcaccatgcaggggataggggctgtggtcttctctttactctatatatgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggctg