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GCTGTCTGAATCTATAAATGAGCGTTTCAGTAGTAGTGGAAAGTATGATCAAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatctccagacctaagtagcaaaagtatgaaaacagtttgttatgccatttaattcatagttggcagtttttttgcaaatctcagttgtcaaatt...
species | Oryza sativa |
transcript | LOC_Os01g10430.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCEST: gi|29619148|gb|CB624160.1|CB624160
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
EST: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGCEST: gi|88215128|gb|CI214977.1|CI214977
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
EST: AAGTAGTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATT GGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
genomic: AAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatct ... gtctgaacagGGCTATGGATCAAAGGGTAACAAGATCCACCATTCTGGGCCTCTAATTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCTGAATCTATAAATGAGCGTTTCAGTAGTAGTGGAAAGTATGATCAAGTATTTCAGCAGAAAGATGACAGGAGTAGCAGGGTGGATGGAGCTATTgtaagtatctccagacctaagtagcaaaagtatgaaaacagtttgttatgccatttaattcatagttggcagtttttttgcaaatctcagttgtcaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT