1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGgtaaatttctagtcttattctgtgcagtattgctcttctcaacttgatatggagtgcctgcatttctttactgtattgtgttcagaattttgtgtctgtttctttcaaaatggttccttattctcatttgaatttcgtttggcag
species | Oryza sativa |
transcript | LOC_Os01g10340.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGG ATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATEST: gi|88513134|gb|CI440640.1|CI440640
genomic: TCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGgtaaatttct ... cgtttggcagATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGAT
EST: GAATATCCATGTGGG ATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATEST: gi|86259409|gb|CI008086.1|CI008086
genomic: GAATATCCATGTGGGgtaaatttct ... cgtttggcagATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGAT
EST: TCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGG ATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGAT
genomic: TCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGgtaaatttct ... cgtttggcagATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGgtaaatttctagtcttattctgtgcagtattgctcttctcaacttgatatggagtgcctgcatttctttactgtattgtgttcagaattttgtgtctgtttctttcaaaatggttccttattctcatttgaatttcgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG