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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAAGAAGTTGGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAGgtttgctgggaacatacctgtatcataagttttaatccttcttgagtggtgttggcatatttatacccatgttgataatttcactag

Basic information

species Oryza sativa
transcript LOC_Os01g10280.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10280.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G133121_T01 (Zea mays), 5'ss of exon 8
AATAAAGAAGTTGGCTACTAATGTAGCTGAAAAGGCTATCAAATCATTGGAAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAGgtttgctgggaacatacctgtatcat---aagttttaatccttcttgagtggtgttggcatatttatacccatgttgataatttcactag
|||||||||||| |||||||  || |||||||| |||||||||||||| ||||| |||||||| || |||||||| || ||||||||| ||||| |||||||||  | ||| |||     |||  |   ||  |||| ||||  | ||||||||||  |||  |||| |   ||||| |  |||| ||||
AATAAAGAAGTTAGCTACTAGCGTGGCTGAAAAAGCTATCAAATCATTAGAAGGAGCTGGTGTCTTTGCTGTAGAGTTGTTTTTAACAGAAGATGATCAGgtttttttggaccatctacatattttttcaaaatttattcctcttggagtggtgtttacatcattatccttgtgttg-ttctttctctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684677|gb|CK073364.1|CK073364
EST:     AAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAG                         GTTTTATTGAATGAAGTAGCTCCAAGGCCTCACAA
genomic: AAGGTGCTGGTGTTTTCGCTGTAGAATTATTTTTAACACAAGATAATCAGgtttgctggg ... atttcactagGTTTTATTGAATGAAGTAGCTCCAAGGCCTCACAA