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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGAATAGTGTACGTTTCATGTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGgtatgtttttgtcctattattgaagatacccattacttcatattattttagttcttagtgcatagccacttcaattaaatacttaatttgtctacag

Basic information

species Oryza sativa
transcript LOC_Os01g09750.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G115198_T02 (Zea mays), 5'ss of exon 8
AATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGAATAGTGTACGTTTCATGTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGgtatgtttttgtcctattattga-agatacccattacttcatattattttagttcttagtgcatagccacttcaattaaatacttaatttgtctacag
||||||||||||  ||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||| ||| |||||| |||||  |  || ||  ||| |  |  ||||||||||||      |||   | ||    |   |   ||||||| || |||
AATCAAGTGGCTGTTAGAAGTTAAAGCTCCTCGAATAGTGTATGTCTCATGTAATCCAGCTACTTGTGCTCGGGATTTGGACTACCTATGTCATGGCGTGgtatgcttt-gtcctactattggcacttaacccataccttttgatattttagttctcttgtgataattagttgg--tgcttcaataatttgactgcag

upper sequence: LOC_Os01g09750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
AATCAAGTGGCTACTAGAAGTTAAAGCCCCTCGAATAGTGTACGTTTCATGTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGgtatgtttttgtcctat-tattgaagatacccattacttcatattattttagttcttagtgcatagccacttcaattaaatacttaatttgtctacag
 || || |  || ||| |  | || || || || || || ||||| ||||||||||| || || |||||||| ||  | |||||| | |||||||||||||||||| | |||| | | |||||    | |  ||  || ||||   |  | ||| | ||    |    |||| |  ||                    
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttat--ctccatagcttcatcgtt-taagccggtgagaacttaatgtag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548300|gb|CA766414.2|CA766414
EST:     GTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTG                         GAGGAAAAAGATTTGAAAGGATGCTACGAGCTGAAGACTGTAATACCTGTA
genomic: GTAATCCAGCTACCTGTGCACGGGATTTGGATTACTTATGTCATGGTGTGgtatgttttt ... ttgtctacagGAGGAAAAAGATTTGAAAGGATGCTACGAGCTGAAGACTGTAATACCTGTA