1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTATGATGGAATGGAGCACTATTGCTTAGAGGGTAATCACATTGTCAACCTCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgcctctctctctctctctctctctctctctctctctctttctttcatcctctgcttaggcttgaaaatgctgatgtaagagtcaatattgag...
species | Oryza sativa |
transcript | LOC_Os01g08270.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGGTGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|84117682|gb|CD151449.1|CD151449
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAAGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|58690593|gb|CK079280.1|CK079280
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|58695451|gb|CK084138.1|CK084138
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|27554428|gb|CA998328.1|CA998328
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCNACCCAA-CGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGT
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCC-ACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGATGGAATGGAGCACTATTGCTTAGAGGGTAATCACATTGTCAACCTCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgcctctctctctctctctctctctctctctctctctctttctttcatcctctgcttaggcttgaaaatgctgatgtaagagtcaatattgag
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