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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAGGTGAGGAAAATAGCCTCAGATTTGCTGTCCAATCCAGTCCAAGTTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaatggtgctttctttttgttgatcagactttgtttcgttattttgaagcagattgttatatgttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g07740.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07740.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G481227_T01 (Zea mays), 5'ss of exon 4
AAAAGAGGTGAGGAAAATAGCCTCAGATTTGCTGTCCAATCCAGTCCAAGTTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaa-tgaaaatggtgctttctttttgttgatcagac--tttgtttcgttattttgaagcagattgttatatgttgcag
|| |||||| || |||||||| || ||||| ||| | || ||||| |||||||||||||| ||||||||||| |||||  | ||||||||||| |||||||| | | ||||||  | |||||||||    | |||||  ||||||||  || |||||||  | |||||| |   |||||
AAGAGAGGTTAGAAAAATAGCGTCTGATTTACTGGCTAACCCAGTTCAAGTTAACATTGGAAACACTGATCAGCTGGTCACAAATAAGTCAATTACTCAGgtgagtaaaaatgtcgttttcttttttcaaaccagacactttgtttctgtaatttgaagtggtttgttacacactgcag

upper sequence: LOC_Os01g07740.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G462134_T01 (Zea mays), 5'ss of exon 4
AAAAGAGGTGAGGAAAATAGCCTCAGATTTGCTGTCCAATCCAGTCCAAGTTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaa-tgaaaatggtgctttctttttgttgatcagac--tttgtttcgttattttgaagcagattgttatatgttgcag
|| |||||| || |||||||| || ||||| ||| | || ||||| |||||||||||||| ||||||||||| ||||| || ||||||||||| |||||||| | | ||||||  | |||||||||    | |||||  ||| ||||  || |||||||  | |||||| |   |||||
AAGAGAGGTTAGAAAAATAGCGTCTGATTTACTGGCTAACCCAGTTCAAGTTAACATTGGAAACACTGATCAGCTGGTCGCAAATAAGTCAATTACTCAGgtgagtaaaaatgtcgttttcttttttcaaaccagacactttatttctgtaatttgaagtggtttgttacacactgcag

upper sequence: LOC_Os01g07740.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G066440_T01 (Zea mays), 5'ss of exon 7
AAAAGAGGTGAGGAAAATAGCCTCAGATTTGCTGTCCAATCCAGTCCAAGTTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaa-tgaaaatggtgctttctttttgttgatcagactttgtttcgttattttgaagcagattgttatatgttgcag
||||||||| || |||||||| || ||||| |||   || ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| | |  |||||    ||| ||||        | ||||||||||  || |||||||  | |||||  |   |||||
AAAAGAGGTTAGAAAAATAGCGTCGGATTTACTGAATAACCCAGTTCAAGTTAACATTGGAAACACTGATCAGCTGGTTGCAAATAAATCAATTACTCAGgtgagtagaaatg----tttattttcaaacccgatactttgtttctgtactttgaagtggtttgttgcacactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218485434|gb|FG946451.1|FG946451
EST:     TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGGAGAAATCGAGGCGGCTTGATCAAAT
genomic: TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCC-GGAGAAATCGAGGCGGCTTGATCAAAT
EST: gi|58594039|gb|CF992347.1|CF992347
EST:     TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGAGAAATCGAGGC
genomic: TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCCGGAGAAATCGAGGC
EST: gi|58667068|gb|CK055754.1|CK055754
EST:     AAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
genomic: AAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
EST: gi|56550141|gb|CX056245.1|CX056245
EST:     TAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
genomic: TAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
EST: gi|218485214|gb|FG951281.1|FG951281
EST:     TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
genomic: TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
EST: gi|58660094|gb|CK048774.1|CK048774
EST:     TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAG                         TATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC
genomic: TTAACATTGGGAACACTGATCAACTGGTTGCCAATAAGTCAATCACTCAGgtaatgaaaa ... tatgttgcagTATGTGGATGTTATCACACCTCCGGAGAAATCGAGGCGGCTTGATCAAATC