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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTTGGGTATGCCATTCTTGTTATCACATCCAGTTGAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttataccatctttctctaatattgaagtttgaatcattctaagagtagcattatgactggttttctatatgaatatgtggcacaatacatattttatttttcctatacttcaatctttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g07720.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07720.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G066362_T01 (Zea mays), 5'ss of exon 8
GTTTTGTTGGGTATGCCATTCTTGTTATCACATCCAGTTGAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttataccatctttctctaatattgaagtttgaatcattctaagagtagcattatgactggttttctatatgaatatgtggcacaatacatattttatttttcctatacttcaatctttttcag
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| || || || || ||||||||||||||  ||||  || |           |||  |||||| ||||  |  || | || ||||||     |   | |    ||  ||  |  ||  | ||| |    |    |   ||   | ||||||||
GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTGgtgtgtataatatttca---------tgatttttgaaccatttcagcagcaacagtatgacatacgtatcacaccc-tagatgtgattatgta-attatgcagtgttaactgttttgtgtttttcag

upper sequence: LOC_Os01g07720.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA19G39740.1 (Glycine max), 5'ss of exon 7
GTTTTGTTGGGTATGCCATTCTTGTTATCACATCCAGTTGAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttataccatctttctctaatattgaagtttgaatcattctaagagtagcattatgactggttttctatatgaatatgtggcacaatacatattttatttttcctatacttcaatctttttcag
 | || |||||  | || ||| || | ||| |||||||||  ||||| ||| |||| ||||||||||| |||||||||||||||||||||| |||||        | | |||   || | ||||      |      | || || |   |  |    | |  | |   | | | | |||    |     ||||  ||                   
ATATTATTGGGGCTTCCTTTCCTGGTTTCATATCCAGTTGCATACATATCAAGAGCCTTCAATCTTGGCCGTGTCTTCATCCATTTCTGgtacttat--------tttttaagtgtgcactttggtgtgataactatgaagtatga-accctgcaaacaaatttagcttttagtataatctgaagccctttttctctg------------------

upper sequence: LOC_Os01g07720.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G37130.1 (Glycine max), 5'ss of exon 7
GTTTTGTTGGGTATGCCATTCTTGTTATCACATCCAGTTGAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttataccatctttctctaatattgaagtttgaatcattctaagagtagcattatgactggttttctatatgaatatgtggcacaatacatattttatttttcctatacttcaa--tctttttcag
 | ||  ||||  | || ||| || | ||| | ||||||   ||||| ||| |||| ||||| ||||| |||||||||||||||||||||| |||||        | | |||  ||| | |||||   || ||     |    | || ||           ||||| |       ||| ||| ||||   ||||  |||| |  ||   | |||||  
ATATTACTGGGACTTCCTTTCCTGGTTTCATACCCAGTTACATACATATCAAGAGCCTTCAACCTTGGCCGTGTCTTCATCCATTTCTGgtacttat--------tttttaagtttgcactttgatgtatact-----tgatgtgataacc----------atgaacac----tgcaa-acaaatttagcttttagtataatctaaagcccttttct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800779|gb|CF326261.1|CF326261
EST:     GAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTG                         GTCTGTAAATTTTAAATTTGTCCCTGAGAAGTTCTTTGTATCAAAAGAGCT
genomic: GAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttatac ... tctttttcagGTCTGTAAATTTTAAATTTGTCCCTGAGAAGTTCTTTGTATCAAAAGAGCT