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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgctactattgcatggtccttttccacttcagttggcatattcagaaccattttggcaaaccacttggatttattctcttatatcaccgccctttgttctctcag

Basic information

species Oryza sativa
transcript LOC_Os01g07720.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89162652|gb|CI099344.1|CI099344
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|89193425|gb|CI050723.1|CI050723
EST:     CTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: CTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|88247507|gb|CI247356.1|CI247356
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|86499763|gb|CI142396.1|CI142396
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|33800779|gb|CF326261.1|CF326261
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|89161465|gb|CI099437.1|CI099437
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|88228317|gb|CI227797.1|CI227797
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|163925452|gb|EG711565.1|EG711565
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|88484104|gb|CI421375.1|CI421375
EST:     CGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: CGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|86492318|gb|CI134951.1|CI134951
EST:     TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
EST: gi|86420213|gb|CI055014.1|CI055014
EST:     TCCAACATTTGTGAG                         GGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC
genomic: TCCAACATTTGTGAGgtaacacgct ... gttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCAC