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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATAGAATACGCCTTTGGAACAAAGGTGTTGATTCAGCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcatacttcatttccctctgaatttcccgtgcatggttgagattaattgcttacatacacttctgctatatatctattcttttcagtgacggtgagcctgaaaaaccattgataatccatgtag

Basic information

species Oryza sativa
transcript LOC_Os01g04920.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04920.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 7
CTAATAGAATACGCCTTTGGAACAAAGGTGTTGATTCAGCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcatacttcatttccctctgaatttcccgtgcatggttgagattaattgcttacatacacttctgctatat-atctattcttttcagtgacggtgagcctgaaaaaccattgataatccatgtag
||||||||||||||||||||||||||||||||||||| || || |||||||| |  ||||||||||| || |||||||| || ||||||    |   |   || ||||   |||||| | | |      |         || |  |  |||  ||| || |   | || |||||||| |||                                      
CTAATAGAATACGCCTTTGGAACAAAGGTGTTGATTCTGCAAGCTTCCATCCTAGATTCCGCAGTCATGAGATGCGAGTCAGGCTAAGgcaatactctgtctcctttcttcctgaatgttctgcatgcagcaagttgagatagactgtataagcttatgttgcttgatgtattcttt-cag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4715717|gb|AU056833.1|AU056833
EST:     GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAG                         GACGCTTTGGGCGTGAAAAG
genomic: GCCAGTTTCCATCCCAAGTTCCGCAGTCACGAAATGCGAGTTAGACTAAGgtggcatcat ... atccatgtagGACGCTTTGGGCGTGAAAAG