1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtactcttttttgccctttatctattctcacctcttaattagagcctgagcatagtactcattactcaatagcatttgaagaaacttctgctcatttatacatttgtgaacaatattgtacag
species | Oryza sativa |
transcript | LOC_Os12g42884.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|218492493|gb|FG951515.1|FG951515
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|300216253|gb|HO088038.1|HO088038
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|29620902|gb|CB625913.1|CB625913
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|29637650|gb|CB642659.1|CB642659
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|29675799|gb|CB672074.1|CB672074
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|58613186|gb|CK040898.1|CK040898
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: GGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|218483058|gb|FG951439.1|FG951439
genomic: GGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: GCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|428283|gb|D24431.1|D24431
genomic: GCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|29615679|gb|CB620691.1|CB620691
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTEST: gi|29635138|gb|CB640147.1|CB640147
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAAGCCTCCAGGAGGTCATCACCTEST: gi|4881161|gb|AU065460.1|AU065460
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCANGCCTCCAGGAGGTCATCACCTEST: gi|33800724|gb|CF326232.1|CF326232
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
EST: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAG GCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
genomic: TGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtact ... tattgtacagGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgtatggtactcttttttgccctttatctattctcacctcttaattagagcctgagcatagtactcattactcaatagcatttgaagaaacttctgctcatttatacatttgtgaacaatattgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG