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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTAGAGGCAGAGAGGATATCTTTAGACCATACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAAAAGGgtaagtaaaaaaatctttttcctttttctgagatgacttgaatcacttagagataaatgtggggtatacaaaatcacaaacaaaaaaaataaatgctgtaactttggttttgcacttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g42730.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33683221|gb|CF311460.1|CF311460
EST:     ACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAAAAGG                         GCAACATGCAGATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGA
genomic: ACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAAAAGGgtaagtaaaa ... gcacttgcagGCAACATGCAAATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGA
EST: gi|29675549|gb|CB671824.1|CB671824
EST:     ACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAAAAGG                         GCAACATGCAAATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGA
genomic: ACGTGTCCTGTAGTTTCTGATGTTAGTGTGCCACCTCTTGTTGGAAAAGGgtaagtaaaa ... gcacttgcagGCAACATGCAAATATTATGCAGACTTCTGGATTTAAGCTGATGCTGTTTGA