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CTGTCATTTATTTTACCATTTTTTCCAGGTGAACAAATATGCGTTCTCAGGTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcattttcttgttatattgaacttattgttaattgtgaaacgtgtgtacttagtaaagtatgctttcccccgattacctgagttatgcactgttg...
species | Oryza sativa |
transcript | LOC_Os12g35570.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|8527950|gb|AU092765.1|AU092765
genomic: CATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|38475276|gb|CF959409.1|CF959409
genomic: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTACCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|3760141|gb|C97399.1|C97399
genomic: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GGCCCGGGACTCAATTGAGCTCCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|89183405|gb|CI045970.1|CI045970
genomic: GG-CCGGGACTCAATTGAGCT-CCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|86426769|gb|CI071866.1|CI071866
genomic: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: CCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAGGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|88248644|gb|CI248493.1|CI248493
genomic: CCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: TAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|86434156|gb|CI094499.1|CI094499
genomic: TAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|8527958|gb|AU092773.1|AU092773
genomic: GCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGEST: gi|218485927|gb|FG959165.1|FG959165
genomic: GTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
EST: CCGGGACTCAATTGAGCTCCATAGTATACTTGGAGCTAACCTTGAT GTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
genomic: CCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcatt ... tgatgttcagGTGGATGTTCCAATCAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCATTTATTTTACCATTTTTTCCAGGTGAACAAATATGCGTTCTCAGGTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATgtaagtcattttcttgttatattgaacttattgttaattgtgaaacgtgtgtacttagtaaagtatgctttcccccgattacctgagttatgcactgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccga