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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCCTATCAGGCTAGCCGATTCAATGCTAAGACTCCTCTGGGAAAATTGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccaccctctttatcttgaactctggacataattaactaactactagttcactcattggcttccgtccactgcaatgcattggctttttgttcact...

Basic information

species Oryza sativa
transcript LOC_Os12g19304.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g19304.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G061732_T01 (Zea mays), 5'ss of exon 3
AGTTGCCTATCAGGCTAGCCGATTCAATGCTAAGACTCCTCTGGGAAAATTGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccaccctct-ttatcttgaactctggacataattaactaactactagttcactcattggcttccgtccactgcaatgcattggctttttgttcact----
|  ||  || || |||| | || | |||| || ||||||||| |||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||||||| |  | |    | ||    |  | | |   | |   |    || |      |||    || |||     |  |   || | | ||  || || ||  |     
ATCTGTATACCAAGCTAACAGAATTAATGTTAGGACTCCTCTCGGAAAATCAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctcccatcgtattgctctatatttttacccttgatgttcaattg-----tcataatttcgctcttcactgcactaaagtactgatttctttttttcctaga

upper sequence: LOC_Os12g19304.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G142836_T01 (Zea mays), 5'ss of exon 5
AGTTGCCTATCAGGCTAGCCGATTCAATGCTAAGACTCCTCTGGGAAAATTGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccaccctct-ttatcttgaactctggacataattaactaactactagttcactcattggcttccgtccactgcaatgc--attggctttttgttcact
|  ||  || || |||| | || | ||||  | ||| ||||| |||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||||||| |  | |    | ||    |  | | |   | |   |    || |   |    | |   |  ||||  | ||||  | | |  |||   ||||| | | | 
ATCTGTATACCAAGCTAACAGAATTAATGTCAGGACACCTCTCGGAAAATCAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctcccatcgtattgctctatatttttacccttgatgttcaattgtca---taatttctctcttcactgcactaaagtactgatttcttttttttcctca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88842431|gb|CI081687.1|CI081687
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|66918937|gb|CX105785.1|CX105785
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88535214|gb|CI464000.1|CI464000
EST:     AGCCCATTTGGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: AGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|16576824|gb|BI804120.1|BI804120
EST:     GGTTGCAGAGTCTTGGGTGTGAGCCCATTTTGCATATGCGACATTT-CAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: GGTTGCAGAG-GTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88234139|gb|CI233988.1|CI233988
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|12404964|gb|AU166565.1|AU166565
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88243130|gb|CI244252.1|CI244252
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTTCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|9865018|gb|AU100768.1|AU100768
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88266754|gb|CI377656.1|CI377656
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88543406|gb|CI473410.1|CI473410
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|88828854|gb|CI073724.1|CI073724
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|86425971|gb|CI071068.1|CI071068
EST:     TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: gi|86523129|gb|CI163335.1|CI163335
EST:     TTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG                         GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA