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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTGTGAGGAGAGAAGCAACTACAATAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAGgtatgtctccttgagctgtgatttctaagtgatgaccatgtgtttatgacatgcataaagtaagactactgtactttgcttttcag

Basic information

species Oryza sativa
transcript LOC_Os12g13590.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13590.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G316815_T01 (Zea mays), 5'ss of exon 2
ATACTGTGAGGAGAGAAGCAACTACAATAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAGgtatgtctccttgagctgtgatttctaagtgatgaccatgtgtttatgacatgcataaagtaa---gactactgtactttgcttttcag
|||||||||||| ||| ||| ||||||||| |||||| ||||||||||| |||||||||||| |||||||||| ||||||||| |  |  |    ||      ||| |    |  || | | |     |  | ||| ||    ||||| || ||||||||| ||||
ATACTGTGAGGAAAGAGGCAGCTACAATAACGGCTGTCTTTCCTTCTCCGAATGAGGTCATGGCAATTCTTGTCCAGgtatgttttttcaa----tggcactcaaggg---tctctgcggtcactgtttttacaaaatagattgactattgcactttgcttctcag

upper sequence: LOC_Os12g13590.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 10
ATACTGTGAGGAGAGAAGCAACTACAATAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAGgtat---------gtctccttgagctgtgatttctaagtgatgacca-tgtgttt--atgacatgcataaagtaagactac-tgtactttgcttttcag----------------------------
|||||||| | | ||||||| | ||||||||||||||||| || ||||| ||||| |||||| ||||| | || ||||||              ||      | ||  || | | | |  |  | ||  |||  ||||  | || | | | ||  ||  ||  || |  |||  |                             
ATACTGTGCGAAAAGAAGCAGCCACAATAATGGCTGTATTCCCCTCTCCTAATGATGTCATGGCAATTTTGGTTCAGgtaccgaagaaggaatgcccatctttatgccttttgatttaacattagtgcattttaatgaagttcagatactgagtgtatatggcctataatttcaaacttataacaaattctgttttgagtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29632378|gb|CB637387.1|CB637387
EST:     TAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAG                         AGAGTTTTAGAACAAAGGGTAACAGCAATTCTTGATAAACTTCTTATTAAG
genomic: TAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAGgtatgtctcc ... tgcttttcagAGAGTTTTAGAACAAAGGGTAACAGCAATTCTTGATAAACTTCTTATTAAG
EST: gi|29669744|gb|CB666019.1|CB666019
EST:     TAATGGCTGTATTTCCTTCTCCAGATGAGGTCATGTCAATTCTTGTGCAG                         AGAGTTTTAGAACAAAGGGTAACAGCAATTCTTGATAAACTTCTTATTAAG
genomic: TAATGGCTGTATTTCCTTCTCCAAATGAGGTCATGTCAATTCTTGTGCAGgtatgtctcc ... tgcttttcagAGAGTTTTAGAACAAAGGGTAACAGCAATTCTTGATAAACTTCTTATTAAG