1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGgtggaatttgttttgctattgttctacattcatcttcttattggatttgtgtaagcaatactgaatcattgttacag
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTGACGAAGATAATCCATATGATCGTATAGTGATTGAG GCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTEST: gi|218503364|gb|FG964057.1|FG964057
genomic: ATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGgtggaatttg ... attgttacagGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCT
EST: ACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAG GCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCTEST: gi|29657715|gb|CB653990.1|CB653990
genomic: ACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGgtggaatttg ... attgttacagGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCT
EST: ATGATCGTATAGTGATTGAG GCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCT
genomic: ATGATCGTATAGTGATTGAGgtggaatttg ... attgttacagGCATCCCTAAACATAGAAGATCCTCAGTTCCAAGAGAAGAGAATGGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAGgtggaatttgttttgctattgttctacattcatcttcttattggatttgtgtaagcaatactgaatcattgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA