Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtgagcaactgagcactacttgaatctaattatctgtcctcatagcactctcgtgtagctttcttgcttatccaacttgtttcacag

Basic information

species Oryza sativa
transcript LOC_Os12g13130.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G095323_T03 (Zea mays), 5'ss of exon 6
AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtga---gcaactgagcactacttgaatctaattat-ctgtcctcatagcactctc----gtgtagctttc----------ttgcttatccaacttgtttcacag-----------------------------
||||||||||| ||||||||||||||||||||||| |   |||||||||||||||||||||||||    |  | |||     |     ||  | | ||  | ||||  ||   ||||      || ||||  |          || |  ||  | || ||||   ||                             
AGCCTTGCAGACAGTTGCTTTCCTATTAATCAAGGTCTTGCTGCCAGCCGTCTTCATGgtaagtggaatgtgagtgaatgtaatgatcattcactcatattttccttgtatgcctctttccaatgcagctagcattgtatatatttcagatgtagctggttttgtagatctttttctgatgtagtttgtcccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88690274|gb|CI734353.1|CI734353
EST:     AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG                         AATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
genomic: AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtgagc ... tgtttcacagAATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
EST: gi|88688437|gb|CI732013.1|CI732013
EST:     AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG                         AATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
genomic: AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtgagc ... tgtttcacagAATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
EST: gi|29645805|gb|CB650812.1|CB650812
EST:     AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG                         AATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
genomic: AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtgagc ... tgtttcacagAATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
EST: gi|29645769|gb|CB650776.1|CB650776
EST:     AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG                         AATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA
genomic: AGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGgtaagtgagc ... tgtttcacagAATTTCTCTTGCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTA