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ACTGATCTTCTAGTGGCTGCTGCCAAGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgtactttcagcttagtcttgctaaaaatggattcctagtctcctatgttggtactgtaaaggttctgttcctctgatttaatatatacaaggt...
species | Oryza sativa |
transcript | LOC_Os12g10784.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCT GTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTTEST: gi|58681266|gb|CK069953.1|CK069953
genomic: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTT
EST: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCT GTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGEST: gi|33681873|gb|CF310112.1|CF310112
genomic: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGG
EST: GACAGGAAAAATTATCAACATCAAGAAAGGGACAATTCTGTGCTCCTTCT GTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTTEST: gi|58589242|gb|CF987550.1|CF987550
genomic: GACTGGAAAAATTATCAACATCAAGAAAGG-ACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTT
EST: AGACTGGACAAATTATCAACATCAAGAAAGGACACTTCTGTGCTCCTTCT GTTATGGCCAACTCTGCAGAGAAAATEST: gi|41883464|gb|BX928437.1|BX928437
genomic: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAAT
EST: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCT GTTATGGTCAACTCTGCAGAAAAAATCAGACTTGCTGGAAATCAAAATGTTEST: gi|11442603|gb|BF430506.1|BF430506
genomic: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTT
EST: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCT GTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTT
genomic: AGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgta ... atctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGATCTTCTAGTGGCTGCTGCCAAGACTGGAAAAATTATCAACATCAAGAAAGGACAATTCTGTGCTCCTTCTgtaagttgtactttcagcttagtcttgctaaaaatggattcctagtctcctatgttggtactgtaaaggttctgttcctctgatttaatatatacaaggt
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA