1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCCTAGCCCGAGGTGACGGTGCCATTTACTTGCGTTTTCCACACAAAGGTTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggttctctttttgaacattgaaaacatagaacccaacaacctgaaaaaaaacatagaacccaactgaaacattttagattgatattctgcttgtgctaaaacgtagaaaccaactgaaacattttagattgatattctgcttgtgctgttttcag
species | Oryza sativa |
transcript | LOC_Os12g08280.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88956394|gb|CI092665.1|CI092665
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|14981612|gb|BI306290.1|BI306290
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTTTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|86428929|gb|CI075610.1|CI075610
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGGTCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88223804|gb|CI223653.1|CI223653
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|86254983|gb|CI017103.1|CI017103
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88848768|gb|CI087290.1|CI087290
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|163918350|gb|EG713202.1|EG713202
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: GGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|89175133|gb|CI111652.1|CI111652
genomic: GGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|25803591|gb|CA759552.1|CA759552
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88904072|gb|CI006305.1|CI006305
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|38476322|gb|CF960455.1|CF960455
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: GAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCGAGGAAACGACTTGGATTTCTCCEST: gi|88246998|gb|CI246847.1|CI246847
genomic: GAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATC-AGGAAACGATTTGGATTTCTCC
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88832353|gb|CI019294.1|CI019294
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|88254339|gb|CI352965.1|CI352965
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|86527133|gb|CI167339.1|CI167339
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCAEST: gi|12405261|gb|AU166862.1|AU166862
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
EST: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAG AAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
genomic: TTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggt ... ctgttttcagAAGCTGGAGGTCTGGTGACAGATGCATCAGGAAACGATTTGGATTTCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTAGCCCGAGGTGACGGTGCCATTTACTTGCGTTTTCCACACAAAGGTTACAGAGAGAAGATCTGGGATCATGCAGCTGGGTCAATCGTCGTGACAGgtatgaaggttctctttttgaacattgaaaacatagaacccaacaacctgaaaaaaaacatagaacccaactgaaacattttagattgatattctgcttgtgctaaaacgtagaaaccaactgaaacattttagattgatattctgcttgtgctgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG