1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCAACCCAATTGCTAGATGGCATGTTTGCCAAGGTTCAATCAACGCCATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctttgtcccaatagtagatggttctttattccttatagaacccactgattctgtattgcttattaaaataacactataaaaccttatttag
species | Oryza sativa |
transcript | LOC_Os12g07450.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATCTCCTTTTCACCAGATGTAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|29665681|gb|CB661956.1|CB661956
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|4715313|gb|AU056430.1|AU056430
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|4715180|gb|AU056297.1|AU056297
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|58684188|gb|CK072875.1|CK072875
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|218478110|gb|FG955323.1|FG955323
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|33822326|gb|CF336974.1|CF336974
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGAEST: gi|58685449|gb|CK074136.1|CK074136
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
EST: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATG GTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
genomic: CATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctt ... ccttatttagGTTATTTGAGAGTGTTTGACTTTTCGAAGGAGCAACTAATATTTGGTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAACCCAATTGCTAGATGGCATGTTTGCCAAGGTTCAATCAACGCCATCTCCTTTTCACCAGATGGAGCATATTTAGCAACTGTTGGGCGAGATGgtacttcctttgtcccaatagtagatggttctttattccttatagaacccactgattctgtattgcttattaaaataacactataaaaccttatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG