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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttgtttttcttacccatattctaatttcagatgaattcgtttttggtagaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa...

Basic information

species Oryza sativa
transcript LOC_Os12g07110.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g07110.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G118286_T01 (Zea mays), 5'ss of exon 8
GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttgtttttcttacccatattctaatttcagatgaattcgtt----tttggtagaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa
 |||||||| ||||| || ||||||||||| |||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||| || ||  |||  |||| | || || || |   || ||  ||  |     | |  |     |   | |   ||| | | || | |     | || | || | 
TTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTACCTTGTTCGTATATTAAGgtcagcttcattt--cttaactattttgta-tcaaagctgtttttatcacgatgttatctgtgcggatctattttgtattttttatgcctaacaatgtttgta-

upper sequence: LOC_Os12g07110.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttgttttt--cttacccatattctaatttcagatgaattcgtttttggt--agaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa
 ||||| || || ||||| |||||||| ||||| || || |||| ||| ||| |||| ||||| || |||||||||||||| ||||| || |   | |||||||  | | |   |   ||  |||  || ||||      | |  |  || || ||    |   |   ||   |||   || |     |    | | | | |  
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccac-ttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag-

upper sequence: LOC_Os12g07110.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
GTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttt-------tgtttttcttacccatattctaatttcagatgaattcgtttttggtagaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaa
|||||| || || ||||  |||||||| || |||||||| |||||||||||  ||||||||||||| |||||||||||||| ||||| || |  ||||||||||||         | |||| ||| |   |  | ||||   ||||   || |   |   |    ||   |   || ||||  |    |  | |     | |     
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaagtggatgaaaatattttacttgcatgtgctttaatgcgagatc--ttggacctacatgtgcac--ttcctagctgaaaaccctgaccttggtagaaaaca---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29669841|gb|CB666116.1|CB666116
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGC
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGC
EST: gi|29614988|gb|CB620001.1|CB620001
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGCCT
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGCCT
EST: gi|29675500|gb|CB671775.1|CB671775
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAGAAAGTCCCCAATGCCT
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGCCT
EST: gi|58030548|gb|CX728091.1|CX728091
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACAATAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAGAGAGTCCCCAATG
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATG
EST: gi|29672201|gb|CB668476.1|CB668476
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACAATGAG                         CTGATTGACTGGTCAGAAGGTGGAT
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGAT
EST: gi|29614945|gb|CB619958.1|CB619958
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATGAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAA-GAGTCCCCAATGCCT
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGCCT
EST: gi|13420751|gb|AU174841.1|AU174841
EST:     ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAG                         CTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGC
genomic: ACCCATCTGTTGGTCGCGTTGGTGCTCCACTACCTTGTTCGTACATTAAGgtaagttttg ... tattatccagCTGATTGACTGGTCAGAAGGTGGATACTTAACAAGTGACTCCCCAATGC