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CTCCTACTGGTGGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatctttcatttactttttgaatgcaaataattgttcatttccttttttatctatttcattttaggtggggccactggtttgcttagtatgcac...
species | Oryza sativa |
transcript | LOC_Os12g06890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCC AACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCEST: gi|218497860|gb|FG958963.1|FG958963
genomic: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatc ... ttgaatgcagAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCC
EST: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCC AACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCEST: gi|33794845|gb|CF323302.1|CF323302
genomic: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatc ... ttgaatgcagAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCC
EST: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCC AACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCEST: gi|58676341|gb|CK065028.1|CK065028
genomic: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatc ... ttgaatgcagAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCC
EST: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCC AACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCC
genomic: GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatc ... ttgaatgcagAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTACTGGTGGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCgtatgatatctttcatttactttttgaatgcaaataattgttcatttccttttttatctatttcattttaggtggggccactggtttgcttagtatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg