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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCGCGTTTGGGATCCCAGGACTGGTTCAAAGAAAATGAAATTGAGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtgaaatgttcttgtagattcatctagacaatgatgtttcttttccttgacaatatcccttaaaattgacttctgttcccgtattgctgcccca...

Basic information

species Oryza sativa
transcript LOC_Os12g06810.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 7
GTTGTTCGCGTTTGGGATCCCAGGACTGGTTCAAAGAAAATGAAATTGAGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtg------------aaatg--ttcttgtagattcatctagacaatgatgtttcttttccttgacaatatcccttaaaattgacttctgttcccgtattgctgcccca
||||| || || |||||||| ||||| || || || || |||||||||||||||||||||||||||||||| || || ||| ||||| |||| || ||||| ||||             |||||  ||||||||||||||||||| | ||| || |    ||||||| || |   | | ||||||||  |   |   | |            
GTTGTCCGAGTGTGGGATCCGAGGACAGGATCGAAAAACATGAAATTGAGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtctaggcatttttcaaatgagttcttgtagattcatctaggctatgctgctctagttccttggcattg--cttaaaaattgatcttcatcttcct------------

upper sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA10G30050.1 (Glycine max), 5'ss of exon 6
GTTGTTCGCGTTTGGGATCCCAGGACTGGTTCAAAGAAAATGAAATTGAGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtgaaatgttcttgtagattcatctagacaatgatgtttcttttccttgac--aatatcccttaaaattgacttctgttcccgtattgctgcccca
||| | ||  |||||||||| ||  |||| |||||||   ||||  | | |||||| || || || ||||||||||||||||| ||| |||||||||||| |||    |    || |     |||  ||   |          |    ||   ||  || || | |      |  |||||  ||  |    | | |    
GTTTTGCGTATTTGGGATCCGAGATCTGGATCAAAGACTTTGAAGCTAAAAGGGCATACAGATAACATCAGGGCTTTACTTCTGGATTCTACTGGCAGgtgtgttgataggactcgtaatttttctgctccccccccccccccccccccccccaccaaaaatacttatggcattgcttctactctggacaagttacta--

upper sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S84_74V6.1 (Physcomitrella patens), 5'ss of exon 7
GTTGTTCGCGTTTGGGATCCCAGGACTGGTTCAAAGAAAATGAAATTGAGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtg--aaatgt-------tcttgtagatt--catctagacaatgatgtttcttttccttgacaatatccctta----aaattgacttc---tgttcccgtattgctgcccca------------
|  || || || |||||||| || ||||| || ||| |||||||||| | ||| |||||||||||| |  ||||| | ||||| || |||||||||||||  || |    ||| |       |  |||  |||  ||||          || ||  ||| |  |  || ||| ||||    ||||    ||     | ||     | | |||                
GCGGTCCGAGTGTGGGATCCAAGAACTGGATCTAAGCAAATGAAATTAAAAGGTCACACTGACAATGTTCGGGCTCTCCTTCTAGACCCTACTGGCAGgtgggtatattgaatttgattttattctgtgcattgtcatcccattttctgtgctttattttccagtgaaaatctcttatgtcaaatctgtttgagacgctcaaccctcgttgcttttgattatatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678630|gb|CB674905.1|CB674905
EST:     AGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAG                         GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG
genomic: AGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtga ... atgtttacagGTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG
EST: gi|29670913|gb|CB667188.1|CB667188
EST:     AGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAG                         GTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG
genomic: AGAGGGCACACTGACAATATCAGGGCTTTACTTCTTGATCCTACTGGCAGgtttgtgtga ... atgtttacagGTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG