1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTATGCTATATACACTTCCTAAGGAAGAGTTGTTAGAATTGTTTCTAACTGTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttcactgtttctcttattttcacttcatacatatcttcagtgggcctagggactgtccgcttggtttgtccatgttgacttatgagttttatctactatttgtccaacaatgtatttattgcatctacag
species | Oryza sativa |
transcript | LOC_Os12g06800.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGAEST: gi|58655081|gb|CK043761.1|CK043761
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGCTATTGGACTACTTGCGTGATATTTGGGCTCTTGAEST: gi|58662681|gb|CK051367.1|CK051367
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGAEST: gi|33793704|gb|CF322735.1|CF322735
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGAEST: gi|58668458|gb|CK057144.1|CK057144
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGAEST: gi|58671021|gb|CK059707.1|CK059707
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
EST: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAG GATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
genomic: GTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttca ... gcatctacagGATAAATAAAACCAAGATATTGGACTACTTGCGTGATATTTGGGCTCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGCTATATACACTTCCTAAGGAAGAGTTGTTAGAATTGTTTCTAACTGTGAGCAGCCAACTTTCACTTCTATGGAATGCTTTCTTGAAATTTCATAGgttaagttcactgtttctcttattttcacttcatacatatcttcagtgggcctagggactgtccgcttggtttgtccatgttgacttatgagttttatctactatttgtccaacaatgtatttattgcatctacag
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