1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATAATGAGAAGGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAGgtgagcctagctagatccatgagaatttcagtacctgcatagaaagaaaatgagttgttcagaactgaatttcttcttcccaataagtttctgacagcataatctgtcaaaaataccaatttgcag
species | Oryza sativa |
transcript | LOC_Os12g05680.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAG GCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGAGGCTGGCTCAGATGGAGEST: gi|4881162|gb|AU065461.1|AU065461
genomic: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAGgtgagcctag ... caatttgcagGCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGAGGCTGGCTCAGATGGAG
EST: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAG GCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGANGCTGGCTCAGATGGAGEST: gi|66914763|gb|CX101611.1|CX101611
genomic: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAGgtgagcctag ... caatttgcagGCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGAGGCTGGCTCAGATGGAG
EST: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAG GCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGAGGCTGGCTCAAATGGAA
genomic: GGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAGgtgagcctag ... caatttgcagGCTTACATCCAGCAGCTTGAGAGCAGCAAGTTGAGGCTGGCTCAGATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATGAGAAGGTTAGCCCAGAACCGAGAGGCAGCACGCAAGAGCCGGCTGCGAAAGAAGgtgagcctagctagatccatgagaatttcagtacctgcatagaaagaaaatgagttgttcagaactgaatttcttcttcccaataagtttctgacagcataatctgtcaaaaataccaatttgcag
- - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG