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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGCACAGCATGGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattacattatattattcgggttcatagatacattttccttctttcgtcattgatcgatcaaaatgaatatttatacttgcctctttctctttcttactaccag

Basic information

species Oryza sativa
transcript LOC_Os12g03860.5
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33692621|gb|CF320860.1|CF320860
EST:     GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAG                         CCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAG
genomic: GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattac ... ttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAG
EST: gi|33796112|gb|CF323922.1|CF323922
EST:     GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAG                         CCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTNGGGAG
genomic: GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattac ... ttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTT-GGGAG
EST: gi|33692622|gb|CF320861.1|CF320861
EST:     GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAG                         CCTGTCAAACAATATCCTCATATTTTTCATG
genomic: GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattac ... ttactaccagCCTGTCAAACAATATCCTCATATTTTTCATG
EST: gi|33797355|gb|CF324540.1|CF324540
EST:     GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAG                         CCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAG
genomic: GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattac ... ttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAG